Untitled Document

Links to example Data sets for ER

Images for "Reflections of Organization: How the organization of the cell determines the organization of the organ and organism.

Animal ER: Tif File Avi File

Cell type

fluorescent data

bright field data

Time Lapse

hypocotyl

hypocotyl

3D epidermal

Root

3D Epidermal

Leaf, time 1

3D Epidermal

Leaf time 2

Time Lapse

Root

Leaf Hair

Time Lapse

Leaf Hair

3D Epidermal-Mesophyll

Leaf

Stomate

Time Lapse

Mesophyll

Time Lapse

Root

hypocotyl

3D - farther up the shoot

hypocotyl

Time Lapse

hypocotyl

Time Lapse

hypocotyl

Time Lapse

hypocotyl

Time Lapse Leaf

Epidermis

Time Lapse Root

Epidermis

Stomate

Undergraduate Images: For these images, you will need to use imagej. All of the channels load as 16 bit grayscale TIF files. They vary between 10 and 60 MB per file.

Tuesday - click on the underlined number (1 = DIC, 2 = gfp(green) , 3 = chloroplast (red)

1 2 3 chlplstERhypocotyl

1 2 3 epidermal3zscan.oif

1 2 3 epidermal4zscan.oif

1 2 3 epidermalcell2.oif

1 2 3 epidermalzsec1.oif

1 2 ERhypocotyl.oif

1 2 3 hypocottredchan.oif

2 leafepiderm553sec.oif

1 2 rootstream11min.oif

1 2 wholeroot488.oif

1 2 zscan1.oif

1 2 3 zsecwithchlrorplast.oif

Demo from Thursday - click on link below

1 2 3 hypocotyl11.oif

1 2 3 hypocotyl12.oif

1 2 hypocotyl3.oif

1 2 3 leaf epidermis.oif

1 2 3 leafhair.oif

1 2 3 mesophyllcell1.oif

1 2 root.oif

1 2 3 stomata1.oif

Wednesday Demo

1 2 3 basalcellofleafhair.oif

1 2 3 hypocotyl2.oif

1 2 3 hypocotyleER1.oif

1 2 3 hypocotylER.oif

1 2 justinscan.oif

1 2 leaftime.oif

1 2 leslieroot.oif

1 2 3 sarascan.oif

1 2 3 stomateER.oif